IL_8ZGY_123
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8ZGY|1|LA|A|3179, 8ZGY|1|LA|A|3185, 8ZGY|1|LA|U|3206, 8ZGY|1|LA|A|3208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_123 not in the Motif Atlas
- Homologous match to IL_8CRE_132
- Geometric discrepancy: 0.1113
- The information below is about IL_8CRE_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42231.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-cSS-L
- Number of instances in this motif group
- 2
Unit IDs
8ZGY|1|LA|U|3178
8ZGY|1|LA|A|3179
8ZGY|1|LA|C|3180
8ZGY|1|LA|G|3181
8ZGY|1|LA|A|3182
8ZGY|1|LA|A|3183
8ZGY|1|LA|U|3184
8ZGY|1|LA|A|3185
8ZGY|1|LA|A|3186
8ZGY|1|LA|G|3187
*
8ZGY|1|LA|C|3203
8ZGY|1|LA|G|3204
8ZGY|1|LA|C|3205
8ZGY|1|LA|U|3206
8ZGY|1|LA|G|3207
8ZGY|1|LA|A|3208
8ZGY|1|LA|A|3209
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LK
- Large ribosomal subunit protein uL6A
- Chain LO
- Large ribosomal subunit protein eL14A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain Lh
- Large ribosomal subunit protein eL33A
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