3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCC*GUUGU
Length
8 nucleotides
Bulged bases
8ZGY|1|LA|U|3353, 8ZGY|1|LA|U|3354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGY|1|LA|G|3347
8ZGY|1|LA|C|3348
8ZGY|1|LA|C|3349
*
8ZGY|1|LA|G|3352
8ZGY|1|LA|U|3353
8ZGY|1|LA|U|3354
8ZGY|1|LA|G|3355
8ZGY|1|LA|U|3356

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LW
Large ribosomal subunit protein eL22A
Chain SV
Small ribosomal subunit protein eS8A

Coloring options:

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