IL_8ZGY_142

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

8ZGY|1|LB|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_142 not in the Motif Atlas

Homologous match to IL_8OI5_140

Geometric discrepancy: 0.0513

The information below is about IL_8OI5_140

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ZGY|1|LB|A|84
8ZGY|1|LB|G|85
8ZGY|1|LB|U|86
8ZGY|1|LB|G|87
*
8ZGY|1|LB|C|94
8ZGY|1|LB|A|95
8ZGY|1|LB|U|96

Current chains

Chain LB

5S rRNA (121-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large ribosomal subunit protein uL30A

Chain LL

Large ribosomal subunit protein uL16

Chain LU

Large ribosomal subunit protein eL20A