IL_8ZGY_173
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8ZGY|1|S2|C|565, 8ZGY|1|S2|G|577, 8ZGY|1|S2|U|578, 8ZGY|1|S2|A|579, 8ZGY|1|S2|U|581, 8ZGY|1|S2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_173 not in the Motif Atlas
- Geometric match to IL_8CRE_423
- Geometric discrepancy: 0.3786
- The information below is about IL_8CRE_423
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8ZGY|1|S2|G|562
8ZGY|1|S2|U|563
8ZGY|1|S2|G|564
8ZGY|1|S2|C|565
8ZGY|1|S2|C|566
8ZGY|1|S2|A|567
8ZGY|1|S2|G|568
*
8ZGY|1|S2|C|575
8ZGY|1|S2|G|576
8ZGY|1|S2|G|577
8ZGY|1|S2|U|578
8ZGY|1|S2|A|579
8ZGY|1|S2|A|580
8ZGY|1|S2|U|581
8ZGY|1|S2|U|582
8ZGY|1|S2|C|583
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
- Chain mR
- RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')
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