3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGUAG*UCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZGY_176 not in the Motif Atlas
Geometric match to IL_8CRE_426
Geometric discrepancy: 0.0609
The information below is about IL_8CRE_426
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8ZGY|1|S2|C|627
8ZGY|1|S2|G|628
8ZGY|1|S2|U|629
8ZGY|1|S2|A|630
8ZGY|1|S2|G|631
*
8ZGY|1|S2|U|968
8ZGY|1|S2|C|969
8ZGY|1|S2|A|970
8ZGY|1|S2|A|971
8ZGY|1|S2|G|972

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain SX
Small ribosomal subunit protein uS17A
Chain SY
Small ribosomal subunit protein uS15
Chain Sb
Small ribosomal subunit protein uS8A
Chain Sc
Small ribosomal subunit protein uS12A

Coloring options:


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