IL_8ZGY_185

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_185 not in the Motif Atlas

Geometric match to IL_7QUA_003

Geometric discrepancy: 0.1241

The information below is about IL_7QUA_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ZGY|1|S2|G|871
8ZGY|1|S2|G|872
8ZGY|1|S2|U|873
*
8ZGY|1|S2|G|954
8ZGY|1|S2|A|955
8ZGY|1|S2|C|956

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A