IL_8ZGY_195

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_195 not in the Motif Atlas

Geometric match to IL_8CRE_442

Geometric discrepancy: 0.0792

The information below is about IL_8CRE_442

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8ZGY|1|S2|G|1111
8ZGY|1|S2|G|1112
8ZGY|1|S2|A|1113
8ZGY|1|S2|G|1114
8ZGY|1|S2|U|1115
8ZGY|1|S2|A|1116
8ZGY|1|S2|U|1117
8ZGY|1|S2|G|1118
*
8ZGY|1|S2|U|1129
8ZGY|1|S2|G|1130
8ZGY|1|S2|A|1131
8ZGY|1|S2|A|1132
8ZGY|1|S2|A|1133
8ZGY|1|S2|C|1134

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain Sc

Small ribosomal subunit protein uS12A