IL_8ZGY_199

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_199 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.2469

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ZGY|1|S2|C|1173
8ZGY|1|S2|C|1174
8ZGY|1|S2|U|1175
*
8ZGY|1|S2|G|1464
8ZGY|1|S2|C|1465
8ZGY|1|S2|G|1466

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A

Chain SJ

Small ribosomal subunit protein uS10

Chain Tb

Transfer RNA; tRNA