IL_8ZGY_212
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUG*UUAUC
- Length
- 8 nucleotides
- Bulged bases
- 8ZGY|1|S2|U|1370, 8ZGY|1|S2|A|1371
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_212 not in the Motif Atlas
- Homologous match to IL_9H3G_227
- Geometric discrepancy: 0.577
- The information below is about IL_9H3G_227
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
8ZGY|1|S2|G|1352
8ZGY|1|S2|U|1353
8ZGY|1|S2|G|1354
*
8ZGY|1|S2|U|1369
8ZGY|1|S2|U|1370
8ZGY|1|S2|A|1371
8ZGY|1|S2|U|1372
8ZGY|1|S2|C|1373
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
Coloring options: