IL_8ZGY_215

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

8ZGY|1|S2|A|1516, 8ZGY|1|S2|U|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|S2|G|1488
8ZGY|1|S2|U|1489
8ZGY|1|S2|C|1490
8ZGY|1|S2|U|1491
8ZGY|1|S2|A|1492
8ZGY|1|S2|A|1493
8ZGY|1|S2|C|1494
*
8ZGY|1|S2|G|1513
8ZGY|1|S2|U|1514
8ZGY|1|S2|A|1515
8ZGY|1|S2|A|1516
8ZGY|1|S2|U|1517
8ZGY|1|S2|C|1518

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain SI

Small ribosomal subunit protein eS19A

Chain SJ

Small ribosomal subunit protein uS10

Chain SM

Small ribosomal subunit protein uS14A