IL_8ZGY_226

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_226 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2912

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8ZGY|1|S2|U|1665
8ZGY|1|S2|U|1666
8ZGY|1|S2|A|1667
*
8ZGY|1|S2|U|1734
8ZGY|1|S2|U|1735
8ZGY|1|S2|G|1736

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LX

Large ribosomal subunit protein uL14A

Chain SV

Small ribosomal subunit protein eS8A