IL_8ZGY_228

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_228 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.165

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8ZGY|1|S2|G|1672
8ZGY|1|S2|G|1673
8ZGY|1|S2|C|1674
*
8ZGY|1|S2|G|1727
8ZGY|1|S2|A|1728
8ZGY|1|S2|C|1729

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A