IL_8ZH3_018

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8ZH3|1|LA|U|534, 8ZH3|1|LA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_018 not in the Motif Atlas

Homologous match to IL_8CRE_022

Geometric discrepancy: 0.123

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8ZH3|1|LA|G|531
8ZH3|1|LA|A|532
8ZH3|1|LA|A|533
8ZH3|1|LA|U|534
8ZH3|1|LA|G|535
8ZH3|1|LA|U|536
8ZH3|1|LA|A|537
8ZH3|1|LA|G|538
*
8ZH3|1|LA|U|553
8ZH3|1|LA|A|554
8ZH3|1|LA|U|555
8ZH3|1|LA|U|556
8ZH3|1|LA|A|557
8ZH3|1|LA|U|558
8ZH3|1|LA|A|559
8ZH3|1|LA|G|560
8ZH3|1|LA|C|561

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LO

Large ribosomal subunit protein eL14A

Chain LU

Large ribosomal subunit protein eL20A