IL_8ZH3_112

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8ZH3|1|LA|A|3142, 8ZH3|1|LA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_112 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.0568

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8ZH3|1|LA|C|3004
8ZH3|1|LA|A|3005
8ZH3|1|LA|A|3006
8ZH3|1|LA|U|3007
*
8ZH3|1|LA|A|3139
8ZH3|1|LA|G|3140
8ZH3|1|LA|A|3141
8ZH3|1|LA|A|3142
8ZH3|1|LA|C|3143
8ZH3|1|LA|G|3144

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LE

Large ribosomal subunit protein uL3

Chain LQ

Large ribosomal subunit protein uL13A