IL_8ZH3_116
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUUUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8ZH3|1|LA|U|3056, 8ZH3|1|LA|U|3058
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_116 not in the Motif Atlas
- Homologous match to IL_8CRE_127
- Geometric discrepancy: 0.0902
- The information below is about IL_8CRE_127
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21001.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZH3|1|LA|U|3054
8ZH3|1|LA|U|3055
8ZH3|1|LA|U|3056
8ZH3|1|LA|U|3057
8ZH3|1|LA|U|3058
8ZH3|1|LA|G|3059
*
8ZH3|1|LA|C|3084
8ZH3|1|LA|G|3085
8ZH3|1|LA|A|3086
8ZH3|1|LA|A|3087
8ZH3|1|LA|G|3088
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LY
- Large ribosomal subunit protein eL24A
- Chain Lf
- Large ribosomal subunit protein eL31A
Coloring options: