IL_8ZH3_118

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8ZH3|1|LA|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_118 not in the Motif Atlas

Homologous match to IL_8CRE_129

Geometric discrepancy: 0.0912

The information below is about IL_8CRE_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8ZH3|1|LA|A|3103
8ZH3|1|LA|U|3104
8ZH3|1|LA|U|3105
8ZH3|1|LA|A|3106
8ZH3|1|LA|U|3107
*
8ZH3|1|LA|A|3127
8ZH3|1|LA|G|3128
8ZH3|1|LA|A|3129
8ZH3|1|LA|A|3130
8ZH3|1|LA|U|3131

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LQ

Large ribosomal subunit protein uL13A

Chain Lo

Large ribosomal subunit protein eL40A