IL_8ZH3_161

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8ZH3|1|S2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_161 not in the Motif Atlas

Geometric match to IL_5F9R_003

Geometric discrepancy: 0.2456

The information below is about IL_5F9R_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8ZH3|1|S2|C|275
8ZH3|1|S2|C|276
*
8ZH3|1|S2|G|279
8ZH3|1|S2|U|280
8ZH3|1|S2|G|281

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A