IL_8ZH3_166

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_166 not in the Motif Atlas

Geometric match to IL_8CRE_412

Geometric discrepancy: 0.1082

The information below is about IL_8CRE_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8ZH3|1|S2|C|411
8ZH3|1|S2|A|412
8ZH3|1|S2|U|413
*
8ZH3|1|S2|A|420
8ZH3|1|S2|A|421
8ZH3|1|S2|G|422

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain LX

Large ribosomal subunit protein uL14A

Chain ST

Small ribosomal subunit protein eS6A