IL_8ZH3_178
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8ZH3|1|S2|A|579, 8ZH3|1|S2|U|581, 8ZH3|1|S2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_178 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.1334
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZH3|1|S2|G|562
8ZH3|1|S2|U|563
8ZH3|1|S2|G|564
8ZH3|1|S2|C|565
8ZH3|1|S2|C|566
8ZH3|1|S2|A|567
8ZH3|1|S2|G|568
*
8ZH3|1|S2|C|575
8ZH3|1|S2|G|576
8ZH3|1|S2|G|577
8ZH3|1|S2|U|578
8ZH3|1|S2|A|579
8ZH3|1|S2|A|580
8ZH3|1|S2|U|581
8ZH3|1|S2|U|582
8ZH3|1|S2|C|583
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
- Chain Ta
- Transfer RNA; tRNA
- Chain mR
- RNA (5'-R(P*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
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