IL_8ZH3_181
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_181 not in the Motif Atlas
- Geometric match to IL_8CRE_426
- Geometric discrepancy: 0.0525
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8ZH3|1|S2|C|627
8ZH3|1|S2|G|628
8ZH3|1|S2|U|629
8ZH3|1|S2|A|630
8ZH3|1|S2|G|631
*
8ZH3|1|S2|U|968
8ZH3|1|S2|C|969
8ZH3|1|S2|A|970
8ZH3|1|S2|A|971
8ZH3|1|S2|G|972
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
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