IL_8ZH3_192
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8ZH3|1|S2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_192 not in the Motif Atlas
- Geometric match to IL_8P9A_422
- Geometric discrepancy: 0.1264
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8ZH3|1|S2|U|893
8ZH3|1|S2|U|894
8ZH3|1|S2|G|895
8ZH3|1|S2|U|896
8ZH3|1|S2|C|897
8ZH3|1|S2|A|898
8ZH3|1|S2|G|899
*
8ZH3|1|S2|C|910
8ZH3|1|S2|U|911
8ZH3|1|S2|U|912
8ZH3|1|S2|G|913
8ZH3|1|S2|G|914
8ZH3|1|S2|A|915
8ZH3|1|S2|U|916
8ZH3|1|S2|U|917
8ZH3|1|S2|U|918
8ZH3|1|S2|A|919
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- Small ribosomal subunit protein uS11B
Coloring options: