IL_8ZH3_203

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_203 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1601

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8ZH3|1|S2|G|1178
8ZH3|1|S2|G|1179
*
8ZH3|1|S2|C|1459
8ZH3|1|S2|A|1460
8ZH3|1|S2|C|1461

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SH

Small ribosomal subunit protein uS13A

Chain Ta

Transfer RNA; tRNA

Chain Tb

Transfer RNA; tRNA