IL_8ZH3_217
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8ZH3|1|S2|U|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_217 not in the Motif Atlas
- Geometric match to IL_8P9A_447
- Geometric discrepancy: 0.1199
- The information below is about IL_8P9A_447
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_94684.1
- Basepair signature
- cWW-tWH-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8ZH3|1|S2|C|1389
8ZH3|1|S2|U|1390
8ZH3|1|S2|A|1391
*
8ZH3|1|S2|U|1407
8ZH3|1|S2|G|1408
8ZH3|1|S2|G|1409
8ZH3|1|S2|A|1410
8ZH3|1|S2|A|1411
8ZH3|1|S2|G|1412
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SO
- Small ribosomal subunit protein RACK1
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