IL_8ZH3_218
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- 8ZH3|1|S2|G|1521, 8ZH3|1|S2|G|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_218 not in the Motif Atlas
- Geometric match to IL_8P9A_448
- Geometric discrepancy: 0.1778
- The information below is about IL_8P9A_448
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZH3|1|S2|G|1480
8ZH3|1|S2|C|1481
8ZH3|1|S2|C|1482
8ZH3|1|S2|A|1483
8ZH3|1|S2|G|1484
8ZH3|1|S2|C|1485
8ZH3|1|S2|G|1486
8ZH3|1|S2|A|1487
*
8ZH3|1|S2|U|1519
8ZH3|1|S2|U|1520
8ZH3|1|S2|G|1521
8ZH3|1|S2|U|1522
8ZH3|1|S2|G|1523
8ZH3|1|S2|A|1524
8ZH3|1|S2|A|1525
8ZH3|1|S2|A|1526
8ZH3|1|S2|C|1527
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SK
- Small ribosomal subunit protein eS25A
- Chain SM
- Small ribosomal subunit protein uS14A
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