IL_8ZH3_221
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_221 not in the Motif Atlas
- Geometric match to IL_8CRE_465
- Geometric discrepancy: 0.0925
- The information below is about IL_8CRE_465
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZH3|1|S2|G|1540
8ZH3|1|S2|G|1541
8ZH3|1|S2|G|1542
8ZH3|1|S2|A|1543
8ZH3|1|S2|U|1544
8ZH3|1|S2|A|1545
*
8ZH3|1|S2|U|1566
8ZH3|1|S2|U|1567
8ZH3|1|S2|C|1568
8ZH3|1|S2|A|1569
8ZH3|1|S2|A|1570
8ZH3|1|S2|C|1571
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SK
- Small ribosomal subunit protein eS25A
Coloring options: