IL_8ZH3_232

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_232 not in the Motif Atlas

Geometric match to IL_8P9A_462

Geometric discrepancy: 0.1189

The information below is about IL_8P9A_462

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8ZH3|1|S2|C|1675
8ZH3|1|S2|U|1676
8ZH3|1|S2|C|1677
8ZH3|1|S2|A|1678
*
8ZH3|1|S2|U|1723
8ZH3|1|S2|U|1724
8ZH3|1|S2|U|1725
8ZH3|1|S2|G|1726

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain LY

Large ribosomal subunit protein eL24A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A