IL_8ZHC_004
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_004 not in the Motif Atlas
- Homologous match to IL_8CRE_005
- Geometric discrepancy: 0.0575
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|C|31
8ZHC|1|LA|U|32
8ZHC|1|LA|G|33
8ZHC|1|LA|A|34
8ZHC|1|LA|A|35
8ZHC|1|LA|C|36
8ZHC|1|LA|U|37
8ZHC|1|LA|U|38
*
8ZHC|1|LA|A|45
8ZHC|1|LA|U|46
8ZHC|1|LA|C|47
8ZHC|1|LA|A|48
8ZHC|1|LA|A|49
8ZHC|1|LA|U|50
8ZHC|1|LA|A|51
8ZHC|1|LA|A|52
8ZHC|1|LA|G|53
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Lq
- Large ribosomal subunit protein eL42A
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