IL_8ZHC_006
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 8ZHC|1|LA|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_006 not in the Motif Atlas
- Homologous match to IL_8CRE_007
- Geometric discrepancy: 0.1488
- The information below is about IL_8CRE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92634.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|A|123
8ZHC|1|LA|U|124
*
8ZHC|1|LA|A|144
8ZHC|1|LA|G|145
8ZHC|1|LA|U|146
8ZHC|1|LA|U|147
8ZHC|1|LA|G|148
8ZHC|1|LA|U|149
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lj
- Large ribosomal subunit protein uL29A
Coloring options: