IL_8ZHC_029
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|932, 8ZHC|1|LA|G|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_029 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0458
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8ZHC|1|LA|G|804
8ZHC|1|LA|A|805
8ZHC|1|LA|A|806
8ZHC|1|LA|A|807
8ZHC|1|LA|G|808
*
8ZHC|1|LA|C|930
8ZHC|1|LA|U|931
8ZHC|1|LA|A|932
8ZHC|1|LA|G|933
8ZHC|1|LA|U|934
8ZHC|1|LA|A|935
8ZHC|1|LA|G|936
8ZHC|1|LA|C|937
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ll
- Large ribosomal subunit protein eL37A
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