IL_8ZHC_041
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|1000
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_041 not in the Motif Atlas
- Homologous match to IL_8P9A_268
- Geometric discrepancy: 0.0806
- The information below is about IL_8P9A_268
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8ZHC|1|LA|G|998
8ZHC|1|LA|C|999
8ZHC|1|LA|G|1000
8ZHC|1|LA|A|1001
8ZHC|1|LA|A|1002
8ZHC|1|LA|U|1003
*
8ZHC|1|LA|A|1045
8ZHC|1|LA|A|1046
8ZHC|1|LA|A|1047
8ZHC|1|LA|C|1048
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- Large ribosomal subunit protein uL18
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- Large ribosomal subunit protein eL21A
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