IL_8ZHC_050
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_050 not in the Motif Atlas
- Homologous match to IL_8P9A_277
- Geometric discrepancy: 0.0835
- The information below is about IL_8P9A_277
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_07396.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|U|1172
8ZHC|1|LA|G|1173
8ZHC|1|LA|C|1174
8ZHC|1|LA|C|1175
8ZHC|1|LA|G|1176
8ZHC|1|LA|G|1177
8ZHC|1|LA|A|1178
8ZHC|1|LA|A|1179
*
8ZHC|1|LA|U|1324
8ZHC|1|LA|A|1325
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain Lh
- Large ribosomal subunit protein eL33A
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