IL_8ZHC_053
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8ZHC|1|LA|C|1195, 8ZHC|1|LA|A|1301, 8ZHC|1|LA|U|1304, 8ZHC|1|LA|G|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_053 not in the Motif Atlas
- Homologous match to IL_8CRE_055
- Geometric discrepancy: 0.0611
- The information below is about IL_8CRE_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83149.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZHC|1|LA|G|1193
8ZHC|1|LA|A|1194
8ZHC|1|LA|C|1195
8ZHC|1|LA|A|1196
8ZHC|1|LA|C|1197
8ZHC|1|LA|C|1198
8ZHC|1|LA|A|1199
8ZHC|1|LA|C|1200
8ZHC|1|LA|A|1201
8ZHC|1|LA|A|1202
8ZHC|1|LA|A|1203
8ZHC|1|LA|A|1204
*
8ZHC|1|LA|U|1298
8ZHC|1|LA|G|1299
8ZHC|1|LA|A|1300
8ZHC|1|LA|A|1301
8ZHC|1|LA|A|1302
8ZHC|1|LA|A|1303
8ZHC|1|LA|U|1304
8ZHC|1|LA|G|1305
8ZHC|1|LA|G|1306
8ZHC|1|LA|A|1307
8ZHC|1|LA|U|1308
8ZHC|1|LA|G|1309
8ZHC|1|LA|G|1310
8ZHC|1|LA|C|1311
8ZHC|1|LA|G|1312
8ZHC|1|LA|C|1313
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain Lh
- Large ribosomal subunit protein eL33A
- Chain Lo
- Large ribosomal subunit protein eL40A
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