IL_8ZHC_063
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UCAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|1513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_063 not in the Motif Atlas
- Homologous match to IL_8P9A_290
- Geometric discrepancy: 0.0854
- The information below is about IL_8P9A_290
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
8ZHC|1|LA|U|1500
8ZHC|1|LA|C|1501
8ZHC|1|LA|A|1502
8ZHC|1|LA|A|1503
8ZHC|1|LA|C|1504
*
8ZHC|1|LA|G|1512
8ZHC|1|LA|G|1513
8ZHC|1|LA|A|1514
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain Ln
- Large ribosomal subunit protein eL39
- Chain pp
- Peptide 2k
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