IL_8ZHC_066

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_066 not in the Motif Atlas

Homologous match to IL_9SUM_059

Geometric discrepancy: 0.5841

The information below is about IL_9SUM_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77718.1

Basepair signature

cWW-L-cSW-cWW

Number of instances in this motif group

11

Unit IDs

8ZHC|1|LA|G|1617
8ZHC|1|LA|A|1618
8ZHC|1|LA|U|1619
8ZHC|1|LA|A|1620
*
8ZHC|1|LA|U|1823
8ZHC|1|LA|G|1824
8ZHC|1|LA|C|1825

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain Lm

Large ribosomal subunit protein eL38