IL_8ZHC_091

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_091 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.1857

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8ZHC|1|LA|G|2250
8ZHC|1|LA|A|2251
8ZHC|1|LA|G|2252
*
8ZHC|1|LA|C|2262
8ZHC|1|LA|U|2263
8ZHC|1|LA|C|2264

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Ta

Transfer RNA; tRNA

Chain eR

Eukaryotic peptide chain release factor subunit 1