IL_8ZHC_104

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|U|2770, 8ZHC|1|LA|C|2771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_104 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.3856

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8ZHC|1|LA|G|2769
8ZHC|1|LA|U|2770
8ZHC|1|LA|C|2771
8ZHC|1|LA|C|2772
*
8ZHC|1|LA|G|2786
8ZHC|1|LA|C|2787

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain LS

Large ribosomal subunit protein eL18A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lq

Large ribosomal subunit protein eL42A