IL_8ZHC_123

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8ZHC|1|LA|A|3129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_123 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.0715

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8ZHC|1|LA|A|3102
8ZHC|1|LA|U|3103
8ZHC|1|LA|U|3104
8ZHC|1|LA|A|3105
8ZHC|1|LA|U|3106
*
8ZHC|1|LA|A|3126
8ZHC|1|LA|G|3127
8ZHC|1|LA|A|3128
8ZHC|1|LA|A|3129
8ZHC|1|LA|U|3130

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LQ

Large ribosomal subunit protein uL13A

Chain Lo

Large ribosomal subunit protein eL40A