IL_8ZHC_130

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_130 not in the Motif Atlas

Homologous match to IL_8CRE_135

Geometric discrepancy: 0.0934

The information below is about IL_8CRE_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8ZHC|1|LA|U|3299
8ZHC|1|LA|U|3300
8ZHC|1|LA|U|3301
8ZHC|1|LA|G|3302
*
8ZHC|1|LA|C|3310
8ZHC|1|LA|U|3311
8ZHC|1|LA|U|3312
8ZHC|1|LA|A|3313

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A

Chain Lf

Large ribosomal subunit protein eL31A