IL_8ZHC_132

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGG*UUUG

Length

7 nucleotides

Bulged bases

8ZHC|1|LA|U|3380, 8ZHC|1|LA|U|3381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_132 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3297

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8ZHC|1|LA|C|3323
8ZHC|1|LA|G|3324
8ZHC|1|LA|G|3325
*
8ZHC|1|LA|U|3379
8ZHC|1|LA|U|3380
8ZHC|1|LA|U|3381
8ZHC|1|LA|G|3382

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Lf

Large ribosomal subunit protein eL31A