IL_8ZHC_153

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8ZHC|1|S2|C|114, 8ZHC|1|S2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_153 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.0538

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8ZHC|1|S2|U|113
8ZHC|1|S2|C|114
8ZHC|1|S2|G|115
8ZHC|1|S2|U|116
*
8ZHC|1|S2|A|300
8ZHC|1|S2|A|301

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A