IL_8ZHC_161

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

8ZHC|1|S2|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_161 not in the Motif Atlas

Geometric match to IL_8P9A_418

Geometric discrepancy: 0.3651

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8ZHC|1|S2|G|274
8ZHC|1|S2|C|275
8ZHC|1|S2|C|276
*
8ZHC|1|S2|G|279
8ZHC|1|S2|U|280
8ZHC|1|S2|G|281
8ZHC|1|S2|C|282

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A