IL_8ZHC_180
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8ZHC|1|S2|A|579, 8ZHC|1|S2|U|581, 8ZHC|1|S2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_180 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.1869
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZHC|1|S2|G|562
8ZHC|1|S2|U|563
8ZHC|1|S2|G|564
8ZHC|1|S2|C|565
8ZHC|1|S2|C|566
8ZHC|1|S2|A|567
8ZHC|1|S2|G|568
*
8ZHC|1|S2|C|575
8ZHC|1|S2|G|576
8ZHC|1|S2|G|577
8ZHC|1|S2|U|578
8ZHC|1|S2|A|579
8ZHC|1|S2|A|580
8ZHC|1|S2|U|581
8ZHC|1|S2|U|582
8ZHC|1|S2|C|583
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
- Chain mR
- RNA (5'-R(P*GP*AP*CP*CP*CP*UP*UP*AP*AP*C)-3')
Coloring options: