IL_8ZHC_199

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|S2|G|1111
8ZHC|1|S2|G|1112
8ZHC|1|S2|A|1113
8ZHC|1|S2|G|1114
8ZHC|1|S2|U|1115
8ZHC|1|S2|A|1116
8ZHC|1|S2|U|1117
8ZHC|1|S2|G|1118
*
8ZHC|1|S2|U|1129
8ZHC|1|S2|G|1130
8ZHC|1|S2|A|1131
8ZHC|1|S2|A|1132
8ZHC|1|S2|A|1133
8ZHC|1|S2|C|1134

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

Large ribosomal subunit protein eL41A

Chain Sc

Small ribosomal subunit protein uS12A