IL_9A9V_002

3D structure

PDB id

9A9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

All-atom model of the Rev Response RNA Element of HIV-1 generated by mutagenesis- and FRET-guided FARFAR2 model selection.

Experimental method

HYBRID

Resolution

Loop

Sequence

GUU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9A9V_002 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1215

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9A9V|1|A|G|10
9A9V|1|A|U|11
9A9V|1|A|U|12
*
9A9V|1|A|A|222
9A9V|1|A|U|223
9A9V|1|A|C|224

Current chains

Chain A

RNA (234-MER)

Nearby chains