IL_9A9V_008

3D structure

PDB id

9A9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

All-atom model of the Rev Response RNA Element of HIV-1 generated by mutagenesis- and FRET-guided FARFAR2 model selection.

Experimental method

HYBRID

Resolution

Loop

Sequence

GGCG*CAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9A9V_008 not in the Motif Atlas

Geometric match to IL_8P9A_419

Geometric discrepancy: 0.1608

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9A9V|1|A|G|136
9A9V|1|A|G|137
9A9V|1|A|C|138
9A9V|1|A|G|139
*
9A9V|1|A|C|155
9A9V|1|A|A|156
9A9V|1|A|A|157
9A9V|1|A|C|158

Current chains

Chain A

RNA (234-MER)

Nearby chains