IL_9AX7_161

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9AX7|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX7_161 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0665

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9AX7|1|a|C|2636
9AX7|1|a|U|2637
9AX7|1|a|G|2638
9AX7|1|a|A|2639
9AX7|1|a|G|2640
*
9AX7|1|a|C|2774
9AX7|1|a|G|2775
9AX7|1|a|A|2776
9AX7|1|a|G|2777
9AX7|1|a|A|2778
9AX7|1|a|U|2779
9AX7|1|a|G|2780
9AX7|1|a|A|2781
9AX7|1|a|G|2782

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13