3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
9AX7|1|a|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX7_161 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.0665
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

9AX7|1|a|C|2636
9AX7|1|a|U|2637
9AX7|1|a|G|2638
9AX7|1|a|A|2639
9AX7|1|a|G|2640
*
9AX7|1|a|C|2774
9AX7|1|a|G|2775
9AX7|1|a|A|2776
9AX7|1|a|G|2777
9AX7|1|a|A|2778
9AX7|1|a|U|2779
9AX7|1|a|G|2780
9AX7|1|a|A|2781
9AX7|1|a|G|2782

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13

Coloring options:


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