IL_9AXU_021

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUUUG*CAUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87030.1

Basepair signature

cWW-cWW-cWW-L-R

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|G|705
9AXU|1|2|U|706
9AXU|1|2|U|707
9AXU|1|2|U|708
9AXU|1|2|G|709
*
9AXU|1|2|C|723
9AXU|1|2|A|724
9AXU|1|2|U|725
9AXU|1|2|C|726
9AXU|1|2|C|727

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL4A

Chain X

Large ribosomal subunit protein eL13

Chain Z

Large ribosomal subunit protein eL15B

Chain c

Large ribosomal subunit protein eL18B

Chain m

Large ribosomal subunit protein uL15B