IL_9AXU_049
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- GACACCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9AXU|1|2|C|1227, 9AXU|1|2|A|1333, 9AXU|1|2|U|1336, 9AXU|1|2|G|1337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9AXU|1|2|G|1225
9AXU|1|2|A|1226
9AXU|1|2|C|1227
9AXU|1|2|A|1228
9AXU|1|2|C|1229
9AXU|1|2|C|1230
9AXU|1|2|A|1231
9AXU|1|2|G|1232
9AXU|1|2|A|1233
9AXU|1|2|A|1234
9AXU|1|2|A|1235
9AXU|1|2|A|1236
*
9AXU|1|2|U|1330
9AXU|1|2|G|1331
9AXU|1|2|A|1332
9AXU|1|2|A|1333
9AXU|1|2|A|1334
9AXU|1|2|A|1335
9AXU|1|2|U|1336
9AXU|1|2|G|1337
9AXU|1|2|G|1338
9AXU|1|2|A|1339
9AXU|1|2|U|1340
9AXU|1|2|G|1341
9AXU|1|2|G|1342
9AXU|1|2|C|1343
9AXU|1|2|G|1344
9AXU|1|2|C|1345
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain O
- Large ribosomal subunit protein uL3A
- Chain S
- Large ribosomal subunit protein uL30C
- Chain V
- Large ribosomal subunit protein uL16A
- Chain a
- Large ribosomal subunit protein uL13A
- Chain r
- Large ribosomal subunit protein eL33A
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