IL_9AXU_124

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AXU_124 not in the Motif Atlas

Geometric match to IL_8C3A_472

Geometric discrepancy: 0.2023

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9AXU|1|2|A|3448
9AXU|1|2|G|3449
9AXU|1|2|C|3450
*
9AXU|1|2|G|3457
9AXU|1|2|U|3458
9AXU|1|2|U|3459

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain g

Large ribosomal subunit protein eL22