IL_9AXU_129
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- GUUAGUAC*GGAAUCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AXU_129 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.2895
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9AXU|1|3|G|71
9AXU|1|3|U|72
9AXU|1|3|U|73
9AXU|1|3|A|74
9AXU|1|3|G|75
9AXU|1|3|U|76
9AXU|1|3|A|77
9AXU|1|3|C|78
*
9AXU|1|3|G|98
9AXU|1|3|G|99
9AXU|1|3|A|100
9AXU|1|3|A|101
9AXU|1|3|U|102
9AXU|1|3|C|103
9AXU|1|3|C|104
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- Large ribosomal subunit protein uL30C
- Chain V
- Large ribosomal subunit protein uL16A
- Chain e
- Large ribosomal subunit protein eL20A
- Chain f
- Large ribosomal subunit protein eL21B
Coloring options: